Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6XS-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6XS-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6XS-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6XS-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 31856532 total, 37977 skipped (flags/unmapped)
Fragments: 16374543 total (15428560 tlen-paired, 2612 hash-paired, 194 singletons, 3358 discordant, 939819 orphans, 4741 too large [>5000 bp], 6857053 duplicates)
Reads: 33571768 total, 33398 skipped (flags/unmapped)
Fragments: 17263824 total (16246410 tlen-paired, 2901 hash-paired, 189 singletons, 3115 discordant, 1011209 orphans, 11060 too large [>5000 bp], 7276109 duplicates)
Reads: 33330445 total, 34484 skipped (flags/unmapped)
Fragments: 17146053 total (16134980 tlen-paired, 2214 hash-paired, 295 singletons, 2478 discordant, 1006086 orphans, 5118 too large [>5000 bp], 7026571 duplicates)
Reads: 40681262 total, 75154 skipped (flags/unmapped)
Fragments: 21440738 total (17778400 tlen-paired, 2201 hash-paired, 332 singletons, 756687 discordant, 2903118 orphans, 314041 too large [>5000 bp], 8410621 duplicates)