Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_HXO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HXO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HXO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HXO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 97401535 total, 99395 skipped (flags/unmapped)
Fragments: 48955035 total (48286302 tlen-paired, 6938 hash-paired, 506 singletons, 15311 discordant, 645978 orphans, 19277 too large [>5000 bp], 20447891 duplicates)
Reads: 106350187 total, 80967 skipped (flags/unmapped)
Fragments: 53500569 total (52723458 tlen-paired, 4565 hash-paired, 711 singletons, 11532 discordant, 760303 orphans, 14548 too large [>5000 bp], 21918381 duplicates)
Reads: 115114289 total, 89202 skipped (flags/unmapped)
Fragments: 57891944 total (57052103 tlen-paired, 9809 hash-paired, 526 singletons, 15471 discordant, 814035 orphans, 27880 too large [>5000 bp], 24050797 duplicates)
Reads: 117329836 total, 159685 skipped (flags/unmapped)
Fragments: 59376813 total (56935944 tlen-paired, 6065 hash-paired, 593 singletons, 490965 discordant, 1943246 orphans, 180182 too large [>5000 bp], 24302569 duplicates)