Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_eEE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_eEE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eEE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eEE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79275888 total, 49911 skipped (flags/unmapped)
Fragments: 39768439 total (39427944 tlen-paired, 3911 hash-paired, 495 singletons, 9011 discordant, 327078 orphans, 8336 too large [>5000 bp], 14076470 duplicates)
Reads: 73156995 total, 61577 skipped (flags/unmapped)
Fragments: 36691981 total (36361510 tlen-paired, 5014 hash-paired, 533 singletons, 13127 discordant, 311797 orphans, 11893 too large [>5000 bp], 13225526 duplicates)
Reads: 77608155 total, 53553 skipped (flags/unmapped)
Fragments: 38933452 total (38560419 tlen-paired, 5487 hash-paired, 406 singletons, 10876 discordant, 356264 orphans, 22184 too large [>5000 bp], 14080675 duplicates)
Reads: 85854234 total, 92976 skipped (flags/unmapped)
Fragments: 43187385 total (42215493 tlen-paired, 5604 hash-paired, 440 singletons, 189982 discordant, 775866 orphans, 81397 too large [>5000 bp], 15588531 duplicates)