Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_C6-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_C6-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_C6-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_C6-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 97315264 total, 74679 skipped (flags/unmapped)
Fragments: 48846174 total (48340093 tlen-paired, 5919 hash-paired, 634 singletons, 18355 discordant, 481173 orphans, 15022 too large [>5000 bp], 19199213 duplicates)
Reads: 101630022 total, 66085 skipped (flags/unmapped)
Fragments: 51014779 total (50505852 tlen-paired, 4262 hash-paired, 672 singletons, 12058 discordant, 491935 orphans, 13493 too large [>5000 bp], 19733064 duplicates)
Reads: 111479120 total, 71519 skipped (flags/unmapped)
Fragments: 55965488 total (55366915 tlen-paired, 6732 hash-paired, 583 singletons, 17210 discordant, 574048 orphans, 25628 too large [>5000 bp], 22068952 duplicates)
Reads: 113194663 total, 115763 skipped (flags/unmapped)
Fragments: 57036079 total (55483077 tlen-paired, 3921 hash-paired, 644 singletons, 301025 discordant, 1247412 orphans, 127399 too large [>5000 bp], 22368577 duplicates)