Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_D2-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_D2-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_D2-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_D2-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77833954 total, 50332 skipped (flags/unmapped)
Fragments: 39121904 total (38629268 tlen-paired, 3729 hash-paired, 542 singletons, 7417 discordant, 480948 orphans, 10652 too large [>5000 bp], 15045083 duplicates)
Reads: 73287201 total, 58432 skipped (flags/unmapped)
Fragments: 36831663 total (36360971 tlen-paired, 4889 hash-paired, 536 singletons, 10600 discordant, 454667 orphans, 10323 too large [>5000 bp], 14454250 duplicates)
Reads: 85130738 total, 54190 skipped (flags/unmapped)
Fragments: 42792733 total (42229186 tlen-paired, 7033 hash-paired, 456 singletons, 10716 discordant, 545342 orphans, 18440 too large [>5000 bp], 16800274 duplicates)
Reads: 86673484 total, 93442 skipped (flags/unmapped)
Fragments: 43805844 total (42181862 tlen-paired, 3806 hash-paired, 526 singletons, 322496 discordant, 1297154 orphans, 133017 too large [>5000 bp], 17042769 duplicates)