Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IBR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IBR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IBR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IBR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73239377 total, 60103 skipped (flags/unmapped)
Fragments: 36746658 total (36390202 tlen-paired, 4910 hash-paired, 452 singletons, 14424 discordant, 336670 orphans, 11540 too large [>5000 bp], 13947264 duplicates)
Reads: 77858890 total, 52449 skipped (flags/unmapped)
Fragments: 39072623 total (38670034 tlen-paired, 6223 hash-paired, 428 singletons, 12879 discordant, 383059 orphans, 22341 too large [>5000 bp], 14852591 duplicates)
Reads: 79218483 total, 49263 skipped (flags/unmapped)
Fragments: 39750586 total (39385995 tlen-paired, 3177 hash-paired, 482 singletons, 10506 discordant, 350426 orphans, 9478 too large [>5000 bp], 14792591 duplicates)
Reads: 86388390 total, 90647 skipped (flags/unmapped)
Fragments: 43478299 total (42441012 tlen-paired, 3766 hash-paired, 434 singletons, 204034 discordant, 829053 orphans, 85316 too large [>5000 bp], 16484446 duplicates)