Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_894-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_894-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_894-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_894-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90148707 total, 67112 skipped (flags/unmapped)
Fragments: 45224684 total (44816693 tlen-paired, 4359 hash-paired, 544 singletons, 15725 discordant, 387363 orphans, 10067 too large [>5000 bp], 17796274 duplicates)
Reads: 96043310 total, 59223 skipped (flags/unmapped)
Fragments: 48179482 total (47763460 tlen-paired, 4956 hash-paired, 642 singletons, 10937 discordant, 399487 orphans, 12626 too large [>5000 bp], 18689998 duplicates)
Reads: 104825477 total, 64697 skipped (flags/unmapped)
Fragments: 52591636 total (52088345 tlen-paired, 6039 hash-paired, 482 singletons, 16172 discordant, 480598 orphans, 29294 too large [>5000 bp], 20765865 duplicates)
Reads: 106314134 total, 109195 skipped (flags/unmapped)
Fragments: 53494533 total (52258144 tlen-paired, 4542 hash-paired, 548 singletons, 240012 discordant, 991287 orphans, 103854 too large [>5000 bp], 21097017 duplicates)