Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BS9T-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BS9T-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BS9T-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BS9T-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87604744 total, 67848 skipped (flags/unmapped)
Fragments: 44039402 total (43457548 tlen-paired, 4510 hash-paired, 540 singletons, 14002 discordant, 562802 orphans, 10717 too large [>5000 bp], 17290750 duplicates)
Reads: 92370875 total, 60304 skipped (flags/unmapped)
Fragments: 46439867 total (45831894 tlen-paired, 4518 hash-paired, 599 singletons, 9782 discordant, 593074 orphans, 12255 too large [>5000 bp], 17849084 duplicates)
Reads: 100886411 total, 62865 skipped (flags/unmapped)
Fragments: 50725906 total (50024218 tlen-paired, 4113 hash-paired, 470 singletons, 14431 discordant, 682674 orphans, 27439 too large [>5000 bp], 19938418 duplicates)
Reads: 102893842 total, 118631 skipped (flags/unmapped)
Fragments: 52017578 total (50036933 tlen-paired, 3885 hash-paired, 479 singletons, 390247 discordant, 1586034 orphans, 163284 too large [>5000 bp], 20276449 duplicates)