Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_F1-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_F1-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_F1-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_F1-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76300450 total, 59037 skipped (flags/unmapped)
Fragments: 38303492 total (37900610 tlen-paired, 3553 hash-paired, 450 singletons, 14834 discordant, 384045 orphans, 9462 too large [>5000 bp], 13972883 duplicates)
Reads: 80110425 total, 48992 skipped (flags/unmapped)
Fragments: 40216840 total (39810519 tlen-paired, 2991 hash-paired, 442 singletons, 9923 discordant, 392965 orphans, 10580 too large [>5000 bp], 14431322 duplicates)
Reads: 88420148 total, 55806 skipped (flags/unmapped)
Fragments: 44389084 total (43912219 tlen-paired, 7063 hash-paired, 433 singletons, 15410 discordant, 453959 orphans, 20283 too large [>5000 bp], 16234383 duplicates)
Reads: 89562174 total, 92174 skipped (flags/unmapped)
Fragments: 45129916 total (43894359 tlen-paired, 3178 hash-paired, 443 singletons, 240353 discordant, 991583 orphans, 101097 too large [>5000 bp], 16406315 duplicates)