Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_P7Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_P7Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_P7Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_P7Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 94953324 total, 75407 skipped (flags/unmapped)
Fragments: 47647557 total (47181938 tlen-paired, 4632 hash-paired, 583 singletons, 18156 discordant, 442248 orphans, 12817 too large [>5000 bp], 18921323 duplicates)
Reads: 101458152 total, 64126 skipped (flags/unmapped)
Fragments: 50912250 total (50435485 tlen-paired, 5293 hash-paired, 691 singletons, 11942 discordant, 458839 orphans, 14528 too large [>5000 bp], 19926155 duplicates)
Reads: 110949127 total, 67618 skipped (flags/unmapped)
Fragments: 55680001 total (55145657 tlen-paired, 4251 hash-paired, 615 singletons, 17600 discordant, 511878 orphans, 17000 too large [>5000 bp], 22188337 duplicates)
Reads: 112225870 total, 120155 skipped (flags/unmapped)
Fragments: 56503664 total (55091399 tlen-paired, 3210 hash-paired, 594 singletons, 273292 discordant, 1135169 orphans, 117075 too large [>5000 bp], 22418141 duplicates)