Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IQ5-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IQ5-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IQ5-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IQ5-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86518374 total, 57849 skipped (flags/unmapped)
Fragments: 43422367 total (42967276 tlen-paired, 5050 hash-paired, 416 singletons, 15358 discordant, 434267 orphans, 25237 too large [>5000 bp], 15771951 duplicates)
Reads: 95635799 total, 103626 skipped (flags/unmapped)
Fragments: 48141373 total (46964511 tlen-paired, 3805 hash-paired, 481 singletons, 231528 discordant, 941048 orphans, 95478 too large [>5000 bp], 17434894 duplicates)
Reads: 81248877 total, 65288 skipped (flags/unmapped)
Fragments: 40770843 total (40364205 tlen-paired, 3622 hash-paired, 497 singletons, 17821 discordant, 384698 orphans, 13549 too large [>5000 bp], 14777472 duplicates)
Reads: 87867449 total, 52677 skipped (flags/unmapped)
Fragments: 44096022 total (43681599 tlen-paired, 4168 hash-paired, 547 singletons, 12375 discordant, 397333 orphans, 10304 too large [>5000 bp], 15704001 duplicates)