Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_6UR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_6UR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_6UR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_6UR-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79145181 total, 51208 skipped (flags/unmapped)
Fragments: 39723921 total (39322263 tlen-paired, 5107 hash-paired, 416 singletons, 13034 discordant, 383101 orphans, 14824 too large [>5000 bp], 14399843 duplicates)
Reads: 72938742 total, 49582 skipped (flags/unmapped)
Fragments: 36602093 total (36251267 tlen-paired, 3927 hash-paired, 455 singletons, 9125 discordant, 337319 orphans, 11374 too large [>5000 bp], 13011676 duplicates)
Reads: 67446179 total, 54439 skipped (flags/unmapped)
Fragments: 33850289 total (33509464 tlen-paired, 4298 hash-paired, 381 singletons, 12737 discordant, 323409 orphans, 7476 too large [>5000 bp], 12238479 duplicates)
Reads: 79887884 total, 86129 skipped (flags/unmapped)
Fragments: 40235115 total (39198637 tlen-paired, 2683 hash-paired, 479 singletons, 199398 discordant, 833918 orphans, 82961 too large [>5000 bp], 14506055 duplicates)