Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_CM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1047_CM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1047_CM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89571692 total, 53204 skipped (flags/unmapped)
Fragments: 44931828 total (44551832 tlen-paired, 4071 hash-paired, 554 singletons, 10723 discordant, 364648 orphans, 10017 too large [>5000 bp], 14816920 duplicates)
Reads: 83664511 total, 62709 skipped (flags/unmapped)
Fragments: 41967138 total (41591923 tlen-paired, 5253 hash-paired, 449 singletons, 16158 discordant, 353355 orphans, 10665 too large [>5000 bp], 14052701 duplicates)
Reads: 88072847 total, 57217 skipped (flags/unmapped)
Fragments: 44180836 total (43773118 tlen-paired, 5155 hash-paired, 516 singletons, 14009 discordant, 388038 orphans, 21256 too large [>5000 bp], 14858124 duplicates)
Reads: 97987182 total, 100038 skipped (flags/unmapped)
Fragments: 49283555 total (48207980 tlen-paired, 4614 hash-paired, 577 singletons, 210775 discordant, 859609 orphans, 90110 too large [>5000 bp], 16513859 duplicates)