Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_I0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_I0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_I0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_I0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65172913 total, 52969 skipped (flags/unmapped)
Fragments: 32724026 total (32361233 tlen-paired, 2574 hash-paired, 402 singletons, 13327 discordant, 346490 orphans, 9392 too large [>5000 bp], 12500038 duplicates)
Reads: 69558325 total, 44397 skipped (flags/unmapped)
Fragments: 34928860 total (34554081 tlen-paired, 3157 hash-paired, 522 singletons, 9208 discordant, 361892 orphans, 9311 too large [>5000 bp], 13094072 duplicates)
Reads: 76895309 total, 84821 skipped (flags/unmapped)
Fragments: 38768584 total (37640022 tlen-paired, 2099 hash-paired, 397 singletons, 218749 discordant, 907317 orphans, 90517 too large [>5000 bp], 14753207 duplicates)
Reads: 75782053 total, 50175 skipped (flags/unmapped)
Fragments: 38053740 total (37618543 tlen-paired, 3181 hash-paired, 347 singletons, 13594 discordant, 418075 orphans, 21410 too large [>5000 bp], 14544317 duplicates)