Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_GXL-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_GXL-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_GXL-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_GXL-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86142735 total, 53887 skipped (flags/unmapped)
Fragments: 43216852 total (42837502 tlen-paired, 3614 hash-paired, 548 singletons, 9632 discordant, 365556 orphans, 10624 too large [>5000 bp], 15564885 duplicates)
Reads: 80311246 total, 65460 skipped (flags/unmapped)
Fragments: 40286967 total (39919734 tlen-paired, 3828 hash-paired, 473 singletons, 13645 discordant, 349287 orphans, 10806 too large [>5000 bp], 14848371 duplicates)
Reads: 84507569 total, 57578 skipped (flags/unmapped)
Fragments: 42400982 total (41988649 tlen-paired, 3553 hash-paired, 405 singletons, 12379 discordant, 395996 orphans, 22214 too large [>5000 bp], 15630577 duplicates)
Reads: 93954822 total, 100412 skipped (flags/unmapped)
Fragments: 47278072 total (46168350 tlen-paired, 3376 hash-paired, 477 singletons, 220142 discordant, 885727 orphans, 92235 too large [>5000 bp], 17386510 duplicates)