Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_88X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_88X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_88X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_88X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75046799 total, 62228 skipped (flags/unmapped)
Fragments: 37637765 total (37309386 tlen-paired, 4408 hash-paired, 409 singletons, 11368 discordant, 312194 orphans, 10822 too large [>5000 bp], 13980222 duplicates)
Reads: 80601205 total, 50433 skipped (flags/unmapped)
Fragments: 40433284 total (40085755 tlen-paired, 2491 hash-paired, 530 singletons, 7872 discordant, 336636 orphans, 10685 too large [>5000 bp], 14778249 duplicates)
Reads: 87515052 total, 55287 skipped (flags/unmapped)
Fragments: 43904590 total (43494323 tlen-paired, 5381 hash-paired, 389 singletons, 11469 discordant, 393028 orphans, 22001 too large [>5000 bp], 16364896 duplicates)
Reads: 88434599 total, 95461 skipped (flags/unmapped)
Fragments: 44503936 total (43466238 tlen-paired, 2969 hash-paired, 436 singletons, 201379 discordant, 832914 orphans, 82308 too large [>5000 bp], 16528051 duplicates)