Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_6NZ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_6NZ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_6NZ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6NZ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74385120 total, 56874 skipped (flags/unmapped)
Fragments: 37369719 total (36921260 tlen-paired, 3804 hash-paired, 361 singletons, 10027 discordant, 434267 orphans, 11718 too large [>5000 bp], 14132154 duplicates)
Reads: 78841184 total, 49087 skipped (flags/unmapped)
Fragments: 39622918 total (39126327 tlen-paired, 3173 hash-paired, 357 singletons, 9161 discordant, 483900 orphans, 15259 too large [>5000 bp], 14985279 duplicates)
Reads: 80217312 total, 45706 skipped (flags/unmapped)
Fragments: 40312131 total (39828527 tlen-paired, 2905 hash-paired, 567 singletons, 7179 discordant, 472953 orphans, 10432 too large [>5000 bp], 14909576 duplicates)
Reads: 87602196 total, 89546 skipped (flags/unmapped)
Fragments: 44240830 total (42701496 tlen-paired, 4180 hash-paired, 436 singletons, 310474 discordant, 1224244 orphans, 127835 too large [>5000 bp], 16603956 duplicates)