Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5VX-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_5VX-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5VX-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5VX-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68490575 total, 60773 skipped (flags/unmapped)
Fragments: 34386068 total (34010153 tlen-paired, 3577 hash-paired, 523 singletons, 11750 discordant, 360065 orphans, 9127 too large [>5000 bp], 13168337 duplicates)
Reads: 72483150 total, 52057 skipped (flags/unmapped)
Fragments: 36394367 total (36004834 tlen-paired, 2775 hash-paired, 544 singletons, 8011 discordant, 378203 orphans, 10553 too large [>5000 bp], 13737255 duplicates)
Reads: 80106393 total, 58468 skipped (flags/unmapped)
Fragments: 40223395 total (39768542 tlen-paired, 6828 hash-paired, 386 singletons, 11954 discordant, 435685 orphans, 18603 too large [>5000 bp], 15412025 duplicates)
Reads: 81130029 total, 90728 skipped (flags/unmapped)
Fragments: 40908912 total (39692987 tlen-paired, 1773 hash-paired, 400 singletons, 240285 discordant, 973467 orphans, 97672 too large [>5000 bp], 15570988 duplicates)