Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_7ZM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_7ZM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_7ZM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_7ZM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63064282 total, 50417 skipped (flags/unmapped)
Fragments: 31632864 total (31353941 tlen-paired, 3095 hash-paired, 421 singletons, 10195 discordant, 265212 orphans, 6885 too large [>5000 bp], 10626567 duplicates)
Reads: 68254852 total, 43395 skipped (flags/unmapped)
Fragments: 34236773 total (33949302 tlen-paired, 2292 hash-paired, 482 singletons, 6698 discordant, 277999 orphans, 8196 too large [>5000 bp], 11282049 duplicates)
Reads: 74324457 total, 79639 skipped (flags/unmapped)
Fragments: 37400506 total (36534068 tlen-paired, 3033 hash-paired, 447 singletons, 167009 discordant, 695949 orphans, 70101 too large [>5000 bp], 12548495 duplicates)
Reads: 73888515 total, 47481 skipped (flags/unmapped)
Fragments: 37065393 total (36720249 tlen-paired, 5835 hash-paired, 394 singletons, 10679 discordant, 328236 orphans, 19439 too large [>5000 bp], 12455090 duplicates)