Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_687-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_687-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_687-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_687-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89544926 total, 73813 skipped (flags/unmapped)
Fragments: 44935785 total (44493098 tlen-paired, 4951 hash-paired, 649 singletons, 15059 discordant, 422028 orphans, 11110 too large [>5000 bp], 16657560 duplicates)
Reads: 95886283 total, 62307 skipped (flags/unmapped)
Fragments: 48121659 total (47663945 tlen-paired, 3684 hash-paired, 663 singletons, 10156 discordant, 443211 orphans, 12266 too large [>5000 bp], 17471366 duplicates)
Reads: 103710216 total, 69854 skipped (flags/unmapped)
Fragments: 52049610 total (51510763 tlen-paired, 6228 hash-paired, 536 singletons, 15425 discordant, 516658 orphans, 29168 too large [>5000 bp], 19306801 duplicates)
Reads: 104654333 total, 119721 skipped (flags/unmapped)
Fragments: 52714261 total (51322176 tlen-paired, 4411 hash-paired, 578 singletons, 268932 discordant, 1118164 orphans, 112416 too large [>5000 bp], 19477643 duplicates)