Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_I4J-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I4J-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I4J-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I4J-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75427516 total, 69421 skipped (flags/unmapped)
Fragments: 37874454 total (37434769 tlen-paired, 3926 hash-paired, 506 singletons, 18178 discordant, 417075 orphans, 13384 too large [>5000 bp], 14324914 duplicates)
Reads: 80765795 total, 56704 skipped (flags/unmapped)
Fragments: 40558460 total (40111273 tlen-paired, 4080 hash-paired, 568 singletons, 12580 discordant, 429959 orphans, 11349 too large [>5000 bp], 15058285 duplicates)
Reads: 87909288 total, 62754 skipped (flags/unmapped)
Fragments: 44146872 total (43641015 tlen-paired, 5261 hash-paired, 424 singletons, 17786 discordant, 482386 orphans, 17800 too large [>5000 bp], 16723185 duplicates)
Reads: 88769448 total, 104447 skipped (flags/unmapped)
Fragments: 44755300 total (43448114 tlen-paired, 3759 hash-paired, 478 singletons, 251992 discordant, 1050957 orphans, 102918 too large [>5000 bp], 16883535 duplicates)