Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_JYB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_JYB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_JYB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_JYB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68472882 total, 56699 skipped (flags/unmapped)
Fragments: 34449836 total (33936776 tlen-paired, 3655 hash-paired, 462 singletons, 10090 discordant, 498853 orphans, 7913 too large [>5000 bp], 13051242 duplicates)
Reads: 73760360 total, 51977 skipped (flags/unmapped)
Fragments: 37115203 total (36558414 tlen-paired, 3542 hash-paired, 507 singletons, 7296 discordant, 545444 orphans, 11964 too large [>5000 bp], 13748182 duplicates)
Reads: 81036614 total, 101187 skipped (flags/unmapped)
Fragments: 41032170 total (39234211 tlen-paired, 2861 hash-paired, 492 singletons, 366095 discordant, 1428511 orphans, 150045 too large [>5000 bp], 15334142 duplicates)
Reads: 72456397 total, 50664 skipped (flags/unmapped)
Fragments: 36462853 total (35894085 tlen-paired, 3318 hash-paired, 384 singletons, 9029 discordant, 556037 orphans, 18224 too large [>5000 bp], 13809077 duplicates)