Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_kM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_kM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_kM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_kM-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77586980 total, 63236 skipped (flags/unmapped)
Fragments: 38931339 total (38552602 tlen-paired, 3859 hash-paired, 532 singletons, 15240 discordant, 359106 orphans, 10352 too large [>5000 bp], 14340003 duplicates)
Reads: 83090984 total, 53655 skipped (flags/unmapped)
Fragments: 41691933 total (41309187 tlen-paired, 3955 hash-paired, 522 singletons, 10484 discordant, 367785 orphans, 10885 too large [>5000 bp], 15111270 duplicates)
Reads: 89972409 total, 59209 skipped (flags/unmapped)
Fragments: 45152297 total (44715120 tlen-paired, 4743 hash-paired, 362 singletons, 15546 discordant, 416526 orphans, 12747 too large [>5000 bp], 16732855 duplicates)
Reads: 91282333 total, 100437 skipped (flags/unmapped)
Fragments: 45948629 total (44831161 tlen-paired, 3646 hash-paired, 444 singletons, 215072 discordant, 898306 orphans, 91694 too large [>5000 bp], 16985918 duplicates)