Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_36F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_36F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_36F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_36F-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87215100 total, 71040 skipped (flags/unmapped)
Fragments: 43745819 total (43349913 tlen-paired, 5573 hash-paired, 646 singletons, 15401 discordant, 374286 orphans, 13677 too large [>5000 bp], 15505175 duplicates)
Reads: 92330096 total, 56662 skipped (flags/unmapped)
Fragments: 46315714 total (45920703 tlen-paired, 3942 hash-paired, 554 singletons, 10523 discordant, 379992 orphans, 11276 too large [>5000 bp], 16108057 duplicates)
Reads: 101119943 total, 63428 skipped (flags/unmapped)
Fragments: 50726905 total (50274254 tlen-paired, 7843 hash-paired, 608 singletons, 15391 discordant, 428809 orphans, 16061 too large [>5000 bp], 18030558 duplicates)
Reads: 101788903 total, 106571 skipped (flags/unmapped)
Fragments: 51216903 total (50041353 tlen-paired, 3553 hash-paired, 611 singletons, 226237 discordant, 945149 orphans, 97143 too large [>5000 bp], 18124502 duplicates)