Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5QK-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5QK-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_5QK-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai

The index file is older than the data file: 1136_5QK-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90410856 total, 71640 skipped (flags/unmapped)
Fragments: 45346591 total (44949662 tlen-paired, 4671 hash-paired, 541 singletons, 16548 discordant, 375169 orphans, 10872 too large [>5000 bp], 17291758 duplicates)
Reads: 96751004 total, 57596 skipped (flags/unmapped)
Fragments: 48526994 total (48121248 tlen-paired, 3589 hash-paired, 658 singletons, 11441 discordant, 390058 orphans, 15068 too large [>5000 bp], 18135396 duplicates)
Reads: 95581214 total, 64547 skipped (flags/unmapped)
Fragments: 47941742 total (47500005 tlen-paired, 9923 hash-paired, 490 singletons, 13493 discordant, 417831 orphans, 25752 too large [>5000 bp], 18299699 duplicates)
Reads: 106169866 total, 102586 skipped (flags/unmapped)
Fragments: 53400293 total (52243890 tlen-paired, 4117 hash-paired, 568 singletons, 227606 discordant, 924112 orphans, 95687 too large [>5000 bp], 20341255 duplicates)