Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_TL0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_TL0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_TL0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_TL0-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69218870 total, 54211 skipped (flags/unmapped)
Fragments: 34720449 total (34407075 tlen-paired, 3485 hash-paired, 512 singletons, 13886 discordant, 295491 orphans, 9882 too large [>5000 bp], 12369041 duplicates)
Reads: 80526731 total, 49992 skipped (flags/unmapped)
Fragments: 40394264 total (40026902 tlen-paired, 3652 hash-paired, 417 singletons, 13897 discordant, 349396 orphans, 19012 too large [>5000 bp], 14434395 duplicates)
Reads: 74286083 total, 46674 skipped (flags/unmapped)
Fragments: 37260981 total (36943645 tlen-paired, 3922 hash-paired, 587 singletons, 9439 discordant, 303388 orphans, 10711 too large [>5000 bp], 13041770 duplicates)
Reads: 81678054 total, 87863 skipped (flags/unmapped)
Fragments: 41082532 total (40180839 tlen-paired, 3090 hash-paired, 476 singletons, 173338 discordant, 724789 orphans, 75196 too large [>5000 bp], 14636914 duplicates)