Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BE58-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BE58-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BE58-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BE58-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 33297582 total, 41776 skipped (flags/unmapped)
Fragments: 17138917 total (16101572 tlen-paired, 2930 hash-paired, 235 singletons, 3345 discordant, 1030835 orphans, 4521 too large [>5000 bp], 7086665 duplicates)
Reads: 35320461 total, 39410 skipped (flags/unmapped)
Fragments: 18181333 total (17067442 tlen-paired, 4578 hash-paired, 215 singletons, 3138 discordant, 1105960 orphans, 12280 too large [>5000 bp], 7542510 duplicates)
Reads: 35438881 total, 40334 skipped (flags/unmapped)
Fragments: 18246159 total (17134686 tlen-paired, 2631 hash-paired, 385 singletons, 2521 discordant, 1105936 orphans, 6275 too large [>5000 bp], 7352915 duplicates)
Reads: 43049573 total, 83799 skipped (flags/unmapped)
Fragments: 22732730 total (18701667 tlen-paired, 1832 hash-paired, 338 singletons, 839985 discordant, 3188908 orphans, 344780 too large [>5000 bp], 8736545 duplicates)