Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_4FN-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4FN-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4FN-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4FN-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 100820129 total, 83468 skipped (flags/unmapped)
Fragments: 50604917 total (50084048 tlen-paired, 5925 hash-paired, 512 singletons, 18489 discordant, 495943 orphans, 11641 too large [>5000 bp], 20828568 duplicates)
Reads: 107907631 total, 70340 skipped (flags/unmapped)
Fragments: 54160461 total (53627137 tlen-paired, 5427 hash-paired, 654 singletons, 13070 discordant, 514173 orphans, 15598 too large [>5000 bp], 21948783 duplicates)
Reads: 117741352 total, 76008 skipped (flags/unmapped)
Fragments: 59103014 total (58494645 tlen-paired, 6101 hash-paired, 578 singletons, 19088 discordant, 582602 orphans, 21248 too large [>5000 bp], 24408420 duplicates)
Reads: 119234683 total, 133982 skipped (flags/unmapped)
Fragments: 60067648 total (58460589 tlen-paired, 3660 hash-paired, 639 singletons, 312234 discordant, 1290526 orphans, 128285 too large [>5000 bp], 24646472 duplicates)