Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BTN7-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTN7-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTN7-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BTN7-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 137081399 total, 88009 skipped (flags/unmapped)
Fragments: 68829680 total (68098106 tlen-paired, 7049 hash-paired, 894 singletons, 18089 discordant, 705542 orphans, 20233 too large [>5000 bp], 27875425 duplicates)
Reads: 136021151 total, 87431 skipped (flags/unmapped)
Fragments: 68293750 total (67560681 tlen-paired, 10227 hash-paired, 660 singletons, 20350 discordant, 701832 orphans, 24356 too large [>5000 bp], 28336383 duplicates)
Reads: 128913727 total, 94824 skipped (flags/unmapped)
Fragments: 64727654 total (64022496 tlen-paired, 5300 hash-paired, 731 singletons, 23811 discordant, 675316 orphans, 19821 too large [>5000 bp], 26720333 duplicates)
Reads: 150483604 total, 143701 skipped (flags/unmapped)
Fragments: 75859941 total (73683253 tlen-paired, 5392 hash-paired, 747 singletons, 433069 discordant, 1737480 orphans, 179124 too large [>5000 bp], 31278722 duplicates)