Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BLGO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BLGO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BLGO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BLGO-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79907031 total, 63114 skipped (flags/unmapped)
Fragments: 40122858 total (39677788 tlen-paired, 3960 hash-paired, 510 singletons, 16033 discordant, 424567 orphans, 11639 too large [>5000 bp], 15657796 duplicates)
Reads: 85171252 total, 56267 skipped (flags/unmapped)
Fragments: 42765803 total (42309288 tlen-paired, 3702 hash-paired, 582 singletons, 11234 discordant, 440997 orphans, 12479 too large [>5000 bp], 16371538 duplicates)
Reads: 93389788 total, 60030 skipped (flags/unmapped)
Fragments: 46895333 total (46380001 tlen-paired, 5895 hash-paired, 442 singletons, 15711 discordant, 493284 orphans, 16409 too large [>5000 bp], 18323700 duplicates)
Reads: 94339788 total, 99844 skipped (flags/unmapped)
Fragments: 47560144 total (46180511 tlen-paired, 4552 hash-paired, 463 singletons, 268925 discordant, 1105693 orphans, 112906 too large [>5000 bp], 18514230 duplicates)