Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_W8X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W8X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W8X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W8X-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78908891 total, 62575 skipped (flags/unmapped)
Fragments: 39627047 total (39170749 tlen-paired, 5428 hash-paired, 496 singletons, 17304 discordant, 433070 orphans, 12894 too large [>5000 bp], 13698174 duplicates)
Reads: 82959894 total, 50423 skipped (flags/unmapped)
Fragments: 41664420 total (41209569 tlen-paired, 3265 hash-paired, 521 singletons, 11773 discordant, 439292 orphans, 10222 too large [>5000 bp], 14188886 duplicates)
Reads: 92210881 total, 94172 skipped (flags/unmapped)
Fragments: 46497857 total (45127419 tlen-paired, 5175 hash-paired, 460 singletons, 265232 discordant, 1099571 orphans, 110513 too large [>5000 bp], 16090196 duplicates)
Reads: 89504905 total, 55152 skipped (flags/unmapped)
Fragments: 44954987 total (44423333 tlen-paired, 3408 hash-paired, 445 singletons, 17595 discordant, 510206 orphans, 25215 too large [>5000 bp], 15606367 duplicates)