Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_4PQ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4PQ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4PQ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4PQ-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65288835 total, 53979 skipped (flags/unmapped)
Fragments: 32710199 total (32485864 tlen-paired, 4768 hash-paired, 481 singletons, 9151 discordant, 209935 orphans, 12437 too large [>5000 bp], 11024400 duplicates)
Reads: 70027671 total, 46477 skipped (flags/unmapped)
Fragments: 35098087 total (34829173 tlen-paired, 5892 hash-paired, 358 singletons, 8558 discordant, 254106 orphans, 19742 too large [>5000 bp], 11797423 duplicates)
Reads: 74141283 total, 47571 skipped (flags/unmapped)
Fragments: 37159281 total (36901044 tlen-paired, 4543 hash-paired, 454 singletons, 7516 discordant, 245724 orphans, 10664 too large [>5000 bp], 12419723 duplicates)
Reads: 74827405 total, 80086 skipped (flags/unmapped)
Fragments: 37594929 total (36922072 tlen-paired, 3724 hash-paired, 400 singletons, 131126 discordant, 537607 orphans, 47734 too large [>5000 bp], 12597232 duplicates)