Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_b69-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_b69-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_b69-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_b69-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90943348 total, 72758 skipped (flags/unmapped)
Fragments: 45616862 total (45203626 tlen-paired, 4981 hash-paired, 435 singletons, 18363 discordant, 389457 orphans, 13379 too large [>5000 bp], 17762547 duplicates)
Reads: 97802996 total, 59670 skipped (flags/unmapped)
Fragments: 49058756 total (48644600 tlen-paired, 4706 hash-paired, 526 singletons, 11818 discordant, 397106 orphans, 11723 too large [>5000 bp], 18913684 duplicates)
Reads: 106211782 total, 66632 skipped (flags/unmapped)
Fragments: 53281265 total (52785405 tlen-paired, 7307 hash-paired, 453 singletons, 18311 discordant, 469789 orphans, 26431 too large [>5000 bp], 20868767 duplicates)
Reads: 107064903 total, 111417 skipped (flags/unmapped)
Fragments: 53862973 total (52670264 tlen-paired, 5626 hash-paired, 488 singletons, 226901 discordant, 959694 orphans, 93861 too large [>5000 bp], 21078535 duplicates)