Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_5VB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_5VB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_5VB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_5VB-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80679862 total, 50552 skipped (flags/unmapped)
Fragments: 40496088 total (40086201 tlen-paired, 3927 hash-paired, 379 singletons, 13024 discordant, 392557 orphans, 15035 too large [>5000 bp], 14121494 duplicates)
Reads: 69596459 total, 51298 skipped (flags/unmapped)
Fragments: 34932053 total (34581081 tlen-paired, 3151 hash-paired, 464 singletons, 12224 discordant, 335133 orphans, 8326 too large [>5000 bp], 12169205 duplicates)
Reads: 74014973 total, 45143 skipped (flags/unmapped)
Fragments: 37148511 total (36790438 tlen-paired, 3637 hash-paired, 420 singletons, 8732 discordant, 345284 orphans, 9256 too large [>5000 bp], 12711636 duplicates)
Reads: 81162790 total, 82468 skipped (flags/unmapped)
Fragments: 40890574 total (39801827 tlen-paired, 3156 hash-paired, 408 singletons, 209835 discordant, 875348 orphans, 87465 too large [>5000 bp], 14232611 duplicates)