Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BOQV-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOQV-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOQV-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOQV-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110730453 total, 69858 skipped (flags/unmapped)
Fragments: 55601813 total (54992962 tlen-paired, 7155 hash-paired, 563 singletons, 15463 discordant, 585670 orphans, 21601 too large [>5000 bp], 21360633 duplicates)
Reads: 105358845 total, 75919 skipped (flags/unmapped)
Fragments: 52899439 total (52337848 tlen-paired, 4956 hash-paired, 621 singletons, 17929 discordant, 538085 orphans, 11377 too large [>5000 bp], 20240535 duplicates)
Reads: 112118834 total, 66644 skipped (flags/unmapped)
Fragments: 56293983 total (55712227 tlen-paired, 4451 hash-paired, 641 singletons, 12793 discordant, 563871 orphans, 14368 too large [>5000 bp], 21203626 duplicates)
Reads: 123536140 total, 118585 skipped (flags/unmapped)
Fragments: 62266651 total (60505351 tlen-paired, 4574 hash-paired, 541 singletons, 351277 discordant, 1404908 orphans, 144851 too large [>5000 bp], 23764471 duplicates)