Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_78Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_78Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_78Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_78Q-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 110705920 total, 85957 skipped (flags/unmapped)
Fragments: 55571312 total (54988586 tlen-paired, 5261 hash-paired, 526 singletons, 23120 discordant, 553819 orphans, 15842 too large [>5000 bp], 21212366 duplicates)
Reads: 116147461 total, 80445 skipped (flags/unmapped)
Fragments: 58303042 total (57681757 tlen-paired, 11055 hash-paired, 627 singletons, 20036 discordant, 589567 orphans, 25563 too large [>5000 bp], 22446216 duplicates)
Reads: 118439329 total, 76899 skipped (flags/unmapped)
Fragments: 59449719 total (58852752 tlen-paired, 6129 hash-paired, 688 singletons, 17052 discordant, 573098 orphans, 18389 too large [>5000 bp], 22309608 duplicates)
Reads: 129300503 total, 132786 skipped (flags/unmapped)
Fragments: 65128100 total (63423557 tlen-paired, 5353 hash-paired, 664 singletons, 334235 discordant, 1364291 orphans, 138236 too large [>5000 bp], 24924750 duplicates)