Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60517192 total, 45509 skipped (flags/unmapped)
Fragments: 30380806 total (30062806 tlen-paired, 3003 hash-paired, 349 singletons, 9996 discordant, 304652 orphans, 7536 too large [>5000 bp], 10583609 duplicates)
Reads: 65750674 total, 40790 skipped (flags/unmapped)
Fragments: 33011203 total (32674520 tlen-paired, 2732 hash-paired, 396 singletons, 7023 discordant, 326532 orphans, 7203 too large [>5000 bp], 11279756 duplicates)
Reads: 70917848 total, 44293 skipped (flags/unmapped)
Fragments: 35604732 total (35228561 tlen-paired, 4746 hash-paired, 349 singletons, 10394 discordant, 360682 orphans, 12561 too large [>5000 bp], 12416077 duplicates)
Reads: 71716001 total, 73230 skipped (flags/unmapped)
Fragments: 36154072 total (35122802 tlen-paired, 2820 hash-paired, 383 singletons, 200661 discordant, 827406 orphans, 81208 too large [>5000 bp], 12542940 duplicates)