Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eWE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eWE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eWE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eWE-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 106512433 total, 66452 skipped (flags/unmapped)
Fragments: 53421625 total (52978651 tlen-paired, 6630 hash-paired, 697 singletons, 12967 discordant, 422680 orphans, 13054 too large [>5000 bp], 20233716 duplicates)
Reads: 98189174 total, 80023 skipped (flags/unmapped)
Fragments: 49247030 total (48810846 tlen-paired, 6184 hash-paired, 531 singletons, 18805 discordant, 410664 orphans, 13143 too large [>5000 bp], 18787523 duplicates)
Reads: 114729021 total, 75540 skipped (flags/unmapped)
Fragments: 57547365 total (57017233 tlen-paired, 7153 hash-paired, 532 singletons, 19584 discordant, 502863 orphans, 31073 too large [>5000 bp], 22194014 duplicates)
Reads: 115413449 total, 124749 skipped (flags/unmapped)
Fragments: 58051510 total (56793744 tlen-paired, 5580 hash-paired, 580 singletons, 238054 discordant, 1013552 orphans, 99906 too large [>5000 bp], 22384838 duplicates)