Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_709-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_709-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_709-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai[W::hts_idx_load3] 
The index file is older than the data file: 1136_709-N1-BDNA-1_B23L5TMLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68610120 total, 50413 skipped (flags/unmapped)
Fragments: 34415062 total (34108878 tlen-paired, 3228 hash-paired, 365 singletons, 12667 discordant, 289924 orphans, 9936 too large [>5000 bp], 11970957 duplicates)
Reads: 73594084 total, 42557 skipped (flags/unmapped)
Fragments: 36916410 total (36604584 tlen-paired, 2749 hash-paired, 456 singletons, 9378 discordant, 299243 orphans, 9203 too large [>5000 bp], 12527127 duplicates)
Reads: 72206831 total, 44700 skipped (flags/unmapped)
Fragments: 36223261 total (35888081 tlen-paired, 5748 hash-paired, 367 singletons, 11311 discordant, 317754 orphans, 16865 too large [>5000 bp], 12603016 duplicates)
Reads: 79761102 total, 76055 skipped (flags/unmapped)
Fragments: 40120023 total (39243028 tlen-paired, 3751 hash-paired, 423 singletons, 170189 discordant, 702632 orphans, 74028 too large [>5000 bp], 13928360 duplicates)