Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_851-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_851-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_851-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_851-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98967156 total, 59377 skipped (flags/unmapped)
Fragments: 49657537 total (49197465 tlen-paired, 5653 hash-paired, 495 singletons, 13098 discordant, 440826 orphans, 17013 too large [>5000 bp], 15821721 duplicates)
Reads: 94102894 total, 69540 skipped (flags/unmapped)
Fragments: 47210337 total (46777169 tlen-paired, 4881 hash-paired, 511 singletons, 15451 discordant, 412325 orphans, 12758 too large [>5000 bp], 14907068 duplicates)
Reads: 100169099 total, 54137 skipped (flags/unmapped)
Fragments: 50256663 total (49823256 tlen-paired, 3383 hash-paired, 640 singletons, 10730 discordant, 418654 orphans, 10465 too large [>5000 bp], 15610373 duplicates)
Reads: 109609038 total, 96795 skipped (flags/unmapped)
Fragments: 55167378 total (53870205 tlen-paired, 3698 hash-paired, 596 singletons, 254878 discordant, 1038001 orphans, 108042 too large [>5000 bp], 17596610 duplicates)