Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_OH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_OH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_OH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59816021 total, 43974 skipped (flags/unmapped)
Fragments: 30048632 total (29697665 tlen-paired, 2649 hash-paired, 321 singletons, 8651 discordant, 339346 orphans, 7225 too large [>5000 bp], 9410165 duplicates)
Reads: 63609192 total, 36062 skipped (flags/unmapped)
Fragments: 31957327 total (31594932 tlen-paired, 2019 hash-paired, 371 singletons, 6008 discordant, 353997 orphans, 6422 too large [>5000 bp], 9731866 duplicates)
Reads: 63423556 total, 39075 skipped (flags/unmapped)
Fragments: 31864879 total (31492896 tlen-paired, 2199 hash-paired, 295 singletons, 7433 discordant, 362056 orphans, 8537 too large [>5000 bp], 9992723 duplicates)
Reads: 70653822 total, 67202 skipped (flags/unmapped)
Fragments: 35658561 total (34495170 tlen-paired, 2208 hash-paired, 335 singletons, 234667 discordant, 926181 orphans, 98007 too large [>5000 bp], 11177718 duplicates)