Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1047_NH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1047_NH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai

The index file is older than the data file: 1047_NH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_NH-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68472011 total, 53791 skipped (flags/unmapped)
Fragments: 34401876 total (33983979 tlen-paired, 2765 hash-paired, 418 singletons, 11656 discordant, 403058 orphans, 8972 too large [>5000 bp], 10423843 duplicates)
Reads: 73073019 total, 47273 skipped (flags/unmapped)
Fragments: 36713971 total (36282848 tlen-paired, 3041 hash-paired, 430 singletons, 8118 discordant, 419534 orphans, 8884 too large [>5000 bp], 10947142 duplicates)
Reads: 79942158 total, 49737 skipped (flags/unmapped)
Fragments: 40172261 total (39670688 tlen-paired, 4635 hash-paired, 362 singletons, 12129 discordant, 484447 orphans, 16354 too large [>5000 bp], 12253189 duplicates)
Reads: 80776565 total, 88008 skipped (flags/unmapped)
Fragments: 40788289 total (39401316 tlen-paired, 2518 hash-paired, 520 singletons, 271610 discordant, 1112325 orphans, 112412 too large [>5000 bp], 12366663 duplicates)