Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cst-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cst-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 659_cst-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cst-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79625711 total, 63873 skipped (flags/unmapped)
Fragments: 39957122 total (39564165 tlen-paired, 4851 hash-paired, 525 singletons, 14700 discordant, 372881 orphans, 10500 too large [>5000 bp], 11549802 duplicates)
Reads: 84431863 total, 51588 skipped (flags/unmapped)
Fragments: 42368666 total (41981110 tlen-paired, 3986 hash-paired, 521 singletons, 9301 discordant, 373748 orphans, 8606 too large [>5000 bp], 12115281 duplicates)
Reads: 92102140 total, 58854 skipped (flags/unmapped)
Fragments: 46223701 total (45762248 tlen-paired, 5279 hash-paired, 465 singletons, 14722 discordant, 440987 orphans, 18668 too large [>5000 bp], 13542423 duplicates)
Reads: 93123061 total, 92484 skipped (flags/unmapped)
Fragments: 46897311 total (45701223 tlen-paired, 3946 hash-paired, 538 singletons, 230719 discordant, 960885 orphans, 98689 too large [>5000 bp], 13705338 duplicates)