Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2QX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2QX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2QX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2QX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 94278634 total, 69511 skipped (flags/unmapped)
Fragments: 47328109 total (46834005 tlen-paired, 4357 hash-paired, 518 singletons, 17464 discordant, 471765 orphans, 12594 too large [>5000 bp], 15866740 duplicates)
Reads: 98801135 total, 58823 skipped (flags/unmapped)
Fragments: 49599599 total (49103597 tlen-paired, 3130 hash-paired, 681 singletons, 12104 discordant, 480087 orphans, 11941 too large [>5000 bp], 16324580 duplicates)
Reads: 108650958 total, 64498 skipped (flags/unmapped)
Fragments: 54546886 total (53975635 tlen-paired, 4075 hash-paired, 507 singletons, 17896 discordant, 548773 orphans, 20984 too large [>5000 bp], 18370399 duplicates)
Reads: 110040778 total, 108323 skipped (flags/unmapped)
Fragments: 55453103 total (53932077 tlen-paired, 2434 hash-paired, 590 singletons, 294583 discordant, 1223419 orphans, 125129 too large [>5000 bp], 18617470 duplicates)