Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BPNX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPNX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPNX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPNX-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72780969 total, 44958 skipped (flags/unmapped)
Fragments: 36575090 total (36131262 tlen-paired, 2859 hash-paired, 510 singletons, 7222 discordant, 433237 orphans, 9789 too large [>5000 bp], 11849868 duplicates)
Reads: 68680015 total, 50130 skipped (flags/unmapped)
Fragments: 34508491 total (34087584 tlen-paired, 2605 hash-paired, 444 singletons, 10421 discordant, 407437 orphans, 10392 too large [>5000 bp], 11457124 duplicates)
Reads: 79487936 total, 48267 skipped (flags/unmapped)
Fragments: 39947477 total (39432915 tlen-paired, 3673 hash-paired, 386 singletons, 10506 discordant, 499997 orphans, 22549 too large [>5000 bp], 13289018 duplicates)
Reads: 81279553 total, 80972 skipped (flags/unmapped)
Fragments: 41060625 total (39617942 tlen-paired, 1679 hash-paired, 444 singletons, 286575 discordant, 1153985 orphans, 115880 too large [>5000 bp], 13540740 duplicates)