Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IWJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IWJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IWJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IWJ-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70211019 total, 49146 skipped (flags/unmapped)
Fragments: 35256656 total (34874519 tlen-paired, 3236 hash-paired, 327 singletons, 10822 discordant, 367752 orphans, 8320 too large [>5000 bp], 11154045 duplicates)
Reads: 75044094 total, 41195 skipped (flags/unmapped)
Fragments: 37683449 total (37292799 tlen-paired, 2291 hash-paired, 448 singletons, 7518 discordant, 380393 orphans, 8421 too large [>5000 bp], 11644607 duplicates)
Reads: 82542845 total, 76483 skipped (flags/unmapped)
Fragments: 41634097 total (40379690 tlen-paired, 1758 hash-paired, 411 singletons, 246319 discordant, 1005919 orphans, 102249 too large [>5000 bp], 13182002 duplicates)
Reads: 81479832 total, 45287 skipped (flags/unmapped)
Fragments: 40918614 total (40472836 tlen-paired, 5349 hash-paired, 438 singletons, 10462 discordant, 429529 orphans, 13642 too large [>5000 bp], 12979447 duplicates)