Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_Q88-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_Q88-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_Q88-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_Q88-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86193225 total, 60706 skipped (flags/unmapped)
Fragments: 43258571 total (42830032 tlen-paired, 3116 hash-paired, 546 singletons, 17024 discordant, 407853 orphans, 11888 too large [>5000 bp], 13512286 duplicates)
Reads: 90573175 total, 52979 skipped (flags/unmapped)
Fragments: 45463783 total (45003428 tlen-paired, 3620 hash-paired, 437 singletons, 14745 discordant, 441553 orphans, 17310 too large [>5000 bp], 14252263 duplicates)
Reads: 92007520 total, 50512 skipped (flags/unmapped)
Fragments: 46176825 total (45743058 tlen-paired, 3196 hash-paired, 556 singletons, 12119 discordant, 417896 orphans, 10905 too large [>5000 bp], 14114048 duplicates)
Reads: 100778901 total, 89910 skipped (flags/unmapped)
Fragments: 50744694 total (49473790 tlen-paired, 2556 hash-paired, 552 singletons, 250573 discordant, 1017223 orphans, 108689 too large [>5000 bp], 15910583 duplicates)