Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_N1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_N1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1047_N1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1047_N1-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91843796 total, 66667 skipped (flags/unmapped)
Fragments: 46092780 total (45637333 tlen-paired, 3879 hash-paired, 560 singletons, 16659 discordant, 434349 orphans, 13239 too large [>5000 bp], 14899519 duplicates)
Reads: 97952213 total, 53620 skipped (flags/unmapped)
Fragments: 49160349 total (48702163 tlen-paired, 3586 hash-paired, 601 singletons, 11455 discordant, 442544 orphans, 10520 too large [>5000 bp], 15594263 duplicates)
Reads: 96859016 total, 57937 skipped (flags/unmapped)
Fragments: 48616304 total (48142380 tlen-paired, 3954 hash-paired, 496 singletons, 14315 discordant, 455159 orphans, 12063 too large [>5000 bp], 15855619 duplicates)
Reads: 107366810 total, 90467 skipped (flags/unmapped)
Fragments: 54074169 total (52697834 tlen-paired, 3126 hash-paired, 512 singletons, 272744 discordant, 1099953 orphans, 114235 too large [>5000 bp], 17654934 duplicates)