Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3UU-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3UU-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3UU-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3UU-N1-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65886508 total, 48439 skipped (flags/unmapped)
Fragments: 33055724 total (32751782 tlen-paired, 3288 hash-paired, 376 singletons, 13409 discordant, 286869 orphans, 6933 too large [>5000 bp], 9890571 duplicates)
Reads: 69990912 total, 39525 skipped (flags/unmapped)
Fragments: 35114575 total (34810629 tlen-paired, 1865 hash-paired, 467 singletons, 8870 discordant, 292744 orphans, 7724 too large [>5000 bp], 10328869 duplicates)
Reads: 76012745 total, 44882 skipped (flags/unmapped)
Fragments: 38138436 total (37780633 tlen-paired, 2712 hash-paired, 418 singletons, 13070 discordant, 341603 orphans, 16506 too large [>5000 bp], 11479566 duplicates)
Reads: 76925306 total, 72594 skipped (flags/unmapped)
Fragments: 38710976 total (37832471 tlen-paired, 1767 hash-paired, 422 singletons, 168072 discordant, 708244 orphans, 69713 too large [>5000 bp], 11616557 duplicates)