Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_881-N2-BDNA-1_B23MHTGLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_881-N2-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_881-N2-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_881-N2-BDNA-1_B23MHTGLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79410634 total, 56958 skipped (flags/unmapped)
Fragments: 39889787 total (39423794 tlen-paired, 2948 hash-paired, 413 singletons, 13883 discordant, 448749 orphans, 11632 too large [>5000 bp], 13486990 duplicates)
Reads: 91782983 total, 56094 skipped (flags/unmapped)
Fragments: 46108319 total (45547931 tlen-paired, 3844 hash-paired, 397 singletons, 14653 discordant, 541494 orphans, 26071 too large [>5000 bp], 15662283 duplicates)
Reads: 83125329 total, 48392 skipped (flags/unmapped)
Fragments: 41758871 total (41285431 tlen-paired, 2660 hash-paired, 472 singletons, 9305 discordant, 461003 orphans, 10335 too large [>5000 bp], 13852747 duplicates)
Reads: 93516396 total, 92214 skipped (flags/unmapped)
Fragments: 47191955 total (45678761 tlen-paired, 4039 hash-paired, 478 singletons, 298447 discordant, 1210230 orphans, 125490 too large [>5000 bp], 15950224 duplicates)